PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_0833 FitnessBrowser__Korea:Ga0059261_0833 (491 amino acids)

SeqID: Ga0059261_0833 FitnessBrowser__Korea:Ga0059261_0833
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16077994: glycerol kinase [Bacillus subtilis subsp. subtilis str. 168]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    Extracellular          0.01
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_0833 FitnessBrowser__Korea:Ga0059261_0833
MGEKLLVIDEGTTSTRAMLFAPDGTLLASRSAELAQHYPAPGLVEHDAAEIWEKTLGCAV
AMVEAAGGADRIAAIGITNQRETIVFWDKATGEPLAPAIVWQDRRSAAICRELKEAGEEP
GVQARTGLLLDPYFSGTKIAWAMANWPQLREAGDRLAIGTVESWLVWKLTANEKRGGLHI
TDATNASRTLLMGLGSGGWSDGLIDLFGAPRAALAEIVDCAGRFGETTLFGGPIPICGMA
GDQQAATIGQACLSPGDTKATFGTGAFVLTNAGERQPASKHRLLSTVLWQLGGRRTYAIE
GSVFVAGSVVKWLRDSLGLIESAGETEVLARSVPDNGGVYFVPALTGLGAPWWEPEARGA
ISGLSLASTRAHVVRAALEAMAHQSHDLKAAFAADGADWSSLRIDGGMITNDWIAQDLAD
VLDLTVERPDFTETTALGAAMLAGVGYGLFAGLDEAAAMRGKVERFAPGMKVEARDARLA
GWKAAVEGVMA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory