PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_0840 FitnessBrowser__Korea:Ga0059261_0840 (375 amino acids)

SeqID: Ga0059261_0840 FitnessBrowser__Korea:Ga0059261_0840
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596217: probable acyl-CoA dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_0840 FitnessBrowser__Korea:Ga0059261_0840
MPLYLNEEQTMLRDAAQQFVGEAAPVSHMRGLRDANDPTGFSRDLWKQFAEMGFTGILIP
DSHGGLGLGHVEAGVVLEEIGRNLSPSPFLTTAVAAVEALKGSAQRERWFPGILAGETVA
ALAIDEKGKHGNAVAMKAERSGNGFRLSGAKQFVTHGHVADLLIVAARTAGSPDDDAGVT
LFAVAKDAAGLTADPQRLADSSLASRLTFENVEVDADAVIGEVDGGRSILNALLAAGRTG
AAAESLGVGGGAMDLTVQYLKERKQFGTLIGSFQALQHRAAHLYTELEVARAAVLKAQQL
LDAGDAKAGEAVSVAKAMAGLASTLAVQEGVQMHGGIGMTDEFDIGFYMKRGRVLAEMFG
DANFHADQLARASGY

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory