PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_0885 FitnessBrowser__Korea:Ga0059261_0885 (344 amino acids)

SeqID: Ga0059261_0885 FitnessBrowser__Korea:Ga0059261_0885
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596936: probable oxidoreductase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_0885 FitnessBrowser__Korea:Ga0059261_0885
MEYRQLGASGLRVPVLSFGAATFGGTGPLFSAWGTSDAAEARRLVDICLDAGVNLFDTAD
VYSNGASEEVLAEAIKGRRDQVLISTKTGLPLGDGPADWGVSRSRLIAAVDASLKRLGTD
HIDILQLHAFDAHTPVEELLATLDTLVAQGKVRHTGVSNYPGWQLMKALAAADRHGWPRF
VAHQVYYSLIGRAYEADLMPLAADQGIGALVWSPLGWGRLTGKIGRNRPVPAGSRLHDTE
QFAPPVSEEHLYKVIDALEAVAEETGKTVPQVAINWLLQRPTVSSVIIGARNEEQLRQNL
GAVGWSLTREQVAALDAASDVLPPYPHTPYRQQEGFARLNPAIV