PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_1776 Ga0059261_1776 Transcriptional regulator/sugar kinase (335 amino acids)

SeqID: Ga0059261_1776 Ga0059261_1776 Transcriptional regulator/sugar kinase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3023867: Glucokinase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_1776 Ga0059261_1776 Transcriptional regulator/sugar kinase
MPLDSFGQAGLMGDEPLLLGAVEAGGTKFLCGIADRTGSVLAQTRIPTTTPAETLDAATA
FFAEHVARHGPLSAFSVGSFGPLSLDPIAPDYGSITSTPKPGWQDVDLLGYFRQMIDAPM
ALDTDVNCAAVGERLFGSGRGLDTFCYVTVGTGIGVGLLVGGAPHGGANHPEAGHIRLPR
APGDHDFAGICPFHGDCLEGLACGPAMKARWGAAAETLPGDHPAWDIEADYLAGLCATLT
YIVRPDRIILGGGVMESHLMHARVRRTLVAKLAGYDASMRSLDMDEYVVPPTAGPSAGLT
GAFALAYRIVTRQWPMHWAATGSLIAPSITEFANA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory