PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_2194 FitnessBrowser__Korea:Ga0059261_2194 (270 amino acids)

SeqID: Ga0059261_2194 FitnessBrowser__Korea:Ga0059261_2194
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595223: shikimate dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_2194 FitnessBrowser__Korea:Ga0059261_2194
MTNAYAEVIGDPIAQSKSPVIHGFWLDKLGLSASYRKTHVTAEGLAGFFASRRDDPNWRG
CNITAPHKIASLDHVPDPGGVRDTIGAINTVFRSAEGTLIGTNTDAAGFYAPLAEFDLEG
APVAMVGAGGAARAILFALARAGVGHVTILNRSPLKAMGLLATFGLKGDVVALNAPIPPV
ALLVNASSLGMTGQPPLELDLGNLPDDAVVYDAVYAPLETGLLAAARARDLDTVDGLEML
IGQAALAFELFFGNAPPREHDAELRALLTA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory