PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_2643 FitnessBrowser__Korea:Ga0059261_2643 (687 amino acids)

SeqID: Ga0059261_2643 FitnessBrowser__Korea:Ga0059261_2643
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.86
    Periplasmic            0.12
    OuterMembrane          0.01
    Extracellular          0.01
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.86

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_2643 FitnessBrowser__Korea:Ga0059261_2643
MRTILLAAAAALALAPAVSAQTVFPNRATAFADKPAIAVGVAWYPEQWPEDRWAVDLDMM
KASGFNTVRIGEFAWARMEPEEGKFDFAWMDRAIAAAVKRGFMVVIGTPSAAPPAWLTQN
YPDTLRVDENGQRASHGGRRHFSFASRRYRELSRRIAVEMATRYGKHPSVVGWQVDNEVG
PPSWDAESVAAWHAFLKQRYGTIDALNRRWTTQYWSQFYNDWSQIPLRQTGQQNPGLLLD
FRHFTTAVWTDYIQNQARAIRPLIDRRAWITTNTMFWNAGFDHFVMHRDLDLASWDNYIP
DGRPDWVANGANHALVRGYKQRNFWLMETQPGRVDWVPVNRALDPGQVRELAWQSVSHGS
DGVLYWQWRPARNGQETYHGAVLGQDGEPNPIHAEITQIAKELTAAAPLLADTGPAAKVA
MLWSYDSRWAIDLQRHHRDFDPVKAFTDVYRPLRVQSQGVHVVSPDAALAAYPLVVAPNL
NVVTQAQADRLAAYVRGGGHLVLGPRSGMKDDANALWPQRQPGPLSDLLGAMVEQYYALD
APVGIKGELGKGKVAIWAEEIRPDAVDVRVIATYTDPGGWLDGKPAAVTRKVGRGSITYF
GAWLDPATMNTLAARLLGEAKIAPLIPEAHADLEISERAGGGKRVMIVINHGTGARPLTP
PSGARFVSGDWAGGQMKAHGVALFQLK