PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_2655 FitnessBrowser__Korea:Ga0059261_2655 (259 amino acids)

SeqID: Ga0059261_2655 FitnessBrowser__Korea:Ga0059261_2655
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1730032: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_2655 FitnessBrowser__Korea:Ga0059261_2655
MRRFEGKCAVISGGNKGIGLAIAERFASEGANIVIGAIEADLSPAEQALAGYGTGVVAQR
CDVTKADDVRALFEAAEAFGGVDIAVQNAGVITIAKVEDLTEGEWDLNLAVNTKGAFLCC
QEAIRRLRARGKPGRLINTASGQARDGFIFTPHYAASKFGVVGMTQSLAKEVATQGITVN
AICPGIIHTDMWDYNDREWGRLMGDYAPGALMEEWVQGIPMKRAGTGADVAALVAFLASA
DASYITGQTINVDGGLIMS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory