PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_2703 FitnessBrowser__Korea:Ga0059261_2703 (313 amino acids)

SeqID: Ga0059261_2703 FitnessBrowser__Korea:Ga0059261_2703
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118129: Sulfate/thiosulfate import ATP-binding protein cysA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_2703 FitnessBrowser__Korea:Ga0059261_2703
MQPILSVRGVSKTYASGHKALGSVDLDINKGEIFALLGPNGAGKTTLISIICGIVTPSSG
TIVVDGHDAISEPRAARMKIGLVPQELSVDMFETVQATTRYSRRLFGRPANDAYIDQVLK
DLSLYDKRNSKVMELSGGMKRRVLIAKALAHEPDILFLDEPTAGVDVSLRRDMWKLIGSL
RERGTTIILTTHYIEEAEEMADRVGVINKGELLLVEGKAELMKKLGKREMDIALVEPMTA
IPGELEEWHLALEDEGHRLRYTFDAQAERTGIPSLLRKLGDLGIQFKDLDTSKSSLEDIF
VDLVETRNEEKAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory