PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_2879 FitnessBrowser__Korea:Ga0059261_2879 (358 amino acids)

SeqID: Ga0059261_2879 FitnessBrowser__Korea:Ga0059261_2879
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Extracellular          0.26
    Periplasmic            0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_2879 FitnessBrowser__Korea:Ga0059261_2879
MIRIFGGPTRYVQGPGAIGELGTLTERLTKRPLLVVDADVLPFVEAQLSTAFAGRPSITL
AFRGEVTHAAIDLLVEQAGDADCVIGIGGGKGLDAAKGVAFKLGLPFIAVPSIASNDSPT
GRSMAIYNDEHVLVAIETIPDSPLLVVTDTQLIANAPARFLRTGMGDALAKKFEAERAVA
DGASNFFGTRQLRTALAIADACYQTLREHGVAAMAAAERHEPDEAFEAVVEANVLMAGLA
WESGGLSYAHAVVRGLVKARGAASAPHGDHVGYATLVQLAIEGRDDGFILDVIGFNRSVG
LPASLAELDMGSPTPDEIAEIARLTTIGPKGGRIIVNAGPGQIADAIKRVEQLATRES

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory