PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_2882 FitnessBrowser__Korea:Ga0059261_2882 (240 amino acids)

SeqID: Ga0059261_2882 FitnessBrowser__Korea:Ga0059261_2882
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1708001: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_2882 FitnessBrowser__Korea:Ga0059261_2882
MDFTGKRAVVTGGIGGIGGAISQALHAAGAEVVATGYDQAEVDARAGEAGFAGIAMKPLD
VSDDAAVRAFAEDTGGIDFLVNCAGTTARGHAAFEEEAFQHVLDVNLTGTMRCCRAFRPA
LAVRGGAIVNIASMMSLFGSGTAPGYAASKGGVALLTKSLAIAWAEQRIRVNAVAPGWIV
TPLTDRQIDPALRERVIGRTPMRRWGEPRHIADAVAFLCSDKASFITGVVLPVDGGYSSV