PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_3121 FitnessBrowser__Korea:Ga0059261_3121 (631 amino acids)

SeqID: Ga0059261_3121 FitnessBrowser__Korea:Ga0059261_3121
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597280: probable asparagine synthetase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_3121 FitnessBrowser__Korea:Ga0059261_3121
MCGIVAISAPDARRFSLDATLDVIAHRGPDDRGSHVSDGGDAALGQNRLSIIDLSCAGHQ
PMWDHSRRYVISYNGETYNFAALRAELEARHGAIPWTGSSDTEVVIEGFAREGIPFLDKL
NGIFALAIYDTADQVMHVLRDPLGIKPLVATEQHGGIFFCSEIKGLLTLPALQRTLRRES
LAEQLAFMYVPEPHTLYHEFHKVEPGVCFTYRAGKLLARTPLFAWLNNAQPITGEAEAIE
ALRHAFTAAVDRQVVADVPVSLFLSGGLDSSAVADQAVRSGASIHDAYTIAFSDADRSLD
AQSDDLHYAQIMADRLGIDLKVIEADSDFLSMLPDLAGFMEDGFSDPAAINTWLICAGAR
KQGIKVMLSGQGADEFLGGYRRYFAERALQRMPGFVRSALSATSGMLPANLPGKFNALNR
RFKRFANLAAQPPRDRILGMYSWATPATIGGLFAAPLASHPGEQFQALLDGLPPGDCVDT
LMAIDRQYDLLSLNLTYTDRMSMAVGVEARVPFLDFDLVRVMNAIPASLKVKGRQGKYIF
KKAMEPQLPHEIIYRSKAGFGLPIRAWMDKRNDLLNRYLNRARIEAQGIFNADAIERIRG
EQAAGAADHANTLLTLLTQQISLEKLGASAT