PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_3183 FitnessBrowser__Korea:Ga0059261_3183 (305 amino acids)

SeqID: Ga0059261_3183 FitnessBrowser__Korea:Ga0059261_3183
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596819: probable hydrolase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_3183 FitnessBrowser__Korea:Ga0059261_3183
MFATIRSHLLLAAAALATPLAAHAQTTPAVAAQPTPVRSGTVEVAGIAYYYEIRGQGEPL
LLLHGGLGSIDMFAPILPALAEGRQVIAVDLQGHGRTPLGTRPIAIEPMGSDMSILLDKL
GYKQVDVMGYSMGAGVAFQLAARHPDRVRRLALVSMTLSTAGIQPEMVPIQRQLTAAMAP
MMKETPMYTGYVARAPKPEDFPRLLDQMGDLMRRDFDWSAQVKALTMPVMLVVGDADMWR
PEGSVEFFKLLGGGQRDGGWQREHVTKHRLAILPGRTHYDIFLAPELVRTVRPFLDGKEG
RVDWQ