PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_3185 FitnessBrowser__Korea:Ga0059261_3185 (439 amino acids)

SeqID: Ga0059261_3185 FitnessBrowser__Korea:Ga0059261_3185
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    4.90
    Periplasmic            2.50
    Extracellular          2.50
    OuterMembrane          0.10
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_3185 FitnessBrowser__Korea:Ga0059261_3185
MRMLATLLATSLFAAPALAGPDFAPAVDADYAAHLEKLFIDFHKNPELSFKETRTAAMMA
KELRAVGGITVTEGVGGTGVVGVMKNGDGPVVLVRADMDGLPLKEDSGLPYMSSVTQTDI
DGVVKPVMHACGHDVHITSMIGTARQLARMKDRWKGTVVFVVQPGEERIDGARRMLADGL
YTRFPKPNYAVAFHVTAGIPTGKIGLEPGISSSSSDSVDITIHGIGTHGAAPHLGKDPIV
MGAEIVMALQTLVSREIAPLKPGVVTVGSFHSGFKHNIISDKAELQLTVRSDDEDTRKKL
LDGIKRIAANVGRMNGLPEDKLPQVKVGFESTPVTLNDPELTKRVRGAITSAFGDNIIHY
EERAGMGAEDFAYFIQKDLGVPGAYFIVGGTPQAEIDAGKAGGKPVSGHHSPFFKIDPKP
SVTLGTTAMTVAVLDLLKK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory