PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_3653 FitnessBrowser__Korea:Ga0059261_3653 (276 amino acids)

SeqID: Ga0059261_3653 FitnessBrowser__Korea:Ga0059261_3653
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 34582384: Phosphate import ATP-binding protein pstB]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    Extracellular          0.01
    Periplasmic            0.01
    OuterMembrane          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_3653 FitnessBrowser__Korea:Ga0059261_3653
MTSVMTQTDLADSADTSAAPARPAEHAKMAARGVNVFYGEKQAIRDVSIDVDMENVTAFI
GPSGCGKSTFLRTLNRMNDTVASARVEGEITLDGENIYDKSMDVVQLRARVGMVFQKPNP
FPKSIYENVAYGPRIHGLARAKGDMDQIVERSLKRAGLWEEVKDRLNDSGTALSGGQQQR
LCIARAIAVDPEVILMDEPCSALDPIATAKIEELIHELRGRYAIVIVTHNMQQAARVSQR
TAFFHLGTLVEYGETDQIFTAPRQERTKDYITGRYG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory