Running PSORTb v3.0 on H281DRAFT_00283 H281DRAFT_00283 solute:Na+ symporter, SSS family (516 amino acids)
SeqID: H281DRAFT_00283 H281DRAFT_00283 solute:Na+ symporter, SSS family Analysis Report: CMSVM- CytoplasmicMembrane [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- CytoplasmicMembrane [13 internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- CytoplasmicMembrane [matched PS50283: NA_SOLUT_SYMP_3 Profile - Cytoplasmic Membrane ] SCL-BLAST- Unknown [No matches against database] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: CytoplasmicMembrane 10.00 Periplasmic 0.00 Extracellular 0.00 OuterMembrane 0.00 Cytoplasmic 0.00 Final Prediction: CytoplasmicMembrane 10.00 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in the ENIGMA genome browser
>H281DRAFT_00283 H281DRAFT_00283 solute:Na+ symporter, SSS family MNAIATFVFVLFFIGVTILGFIAAHWRRGDLAHLEEWGLGGRRFGTIVTWFLLGGDLYTA YTFIAVPALVFGAGATGFFALPYTILIYPFAFVVFPKLWSIAKRQGYVTSADFVSARYGS RMLALAIAVTGIVATMPYIALQLVGIEVVIGALGFDTKGFVGDLPLIIAFAILAAYTYTS GLRAPAMIAVVKDVLIYITIFAAIIVIPPQLGGFGHIFATVPPAKLLLKAPDVSSLNGYS AYATLAVGSALALFLYPHSITAVLSSKSGNTIRRNMAMLPAYSLVLGLLALLGFMALASG VKDMPEFAPYFKAFGPNFAVPALFLHFFPSWFVGVAFAAIGIGALVPAAIMSIAAANLYT RNIHKEFVNRNMTHEQETNVAKLVSLIVKVGAVAFILGLPLTYAIQLQLLGGIWIIQTLP AIVLGLYTRVLDYRGLLLGWAVGIATGTWMAVSLKLAGSIFTIHLFGMAIPGYAAVWSLI VNLVVAVVVSLLVRAFGMQRAEDRTRPEDYLDVVES
Lawrence Berkeley National Laboratory