PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_00943 FitnessBrowser__Burk376:H281DRAFT_00943 (529 amino acids)

SeqID: H281DRAFT_00943 FitnessBrowser__Burk376:H281DRAFT_00943
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_00943 FitnessBrowser__Burk376:H281DRAFT_00943
MTAPVTATSADTRSTQATSTHVKLKVHPVILAGGSGTRLWPMSREQHPKQLIGLLGDDSL
LQSTTRRLDGLEAGYPLTGQLVVVANEEQRFTTAEQLRTSGKPSRLILEPVGRDTAPALT
VAALSIAAQDEDGIMVVMPADHAVTDLDGFHAAVAAGVQHAAAGNIVTMGIVPTRAETGY
GYIRIGAPVATPGNPDETRADNAAQDAAWDAADADAPIAAHKLDRFVEKPHLELAQRYVE
SREYWWNSGIFIMRASTWLKAIRHFQPAIYEACDAAYAGGKSDGDFFRLQRDAFSASPSN
SIDYAVMEQLGNDQTAAAGVVMPLNAGWSDVGSWDAIWDISEKDAEQNVGRGRVMFEGAS
STFAHSEGRLIACVGTQDLVVVETADAILVADKSRVQDVKKIVARIRSEGGLEAANHRKV
HRPWGNYDSVDSGERFQVKRIVVKPGARLSLQMHHHRAEHWIVVRGTALVTRGEERFIVS
ENESAYIPLGVTHRLENPGKMPLEMIEVQSGSYLGEDDIVRFDDTYGRQ