PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_00963 FitnessBrowser__Burk376:H281DRAFT_00963 (723 amino acids)

SeqID: H281DRAFT_00963 FitnessBrowser__Burk376:H281DRAFT_00963
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 585455: Malate synthase G]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_00963 FitnessBrowser__Burk376:H281DRAFT_00963
MTQMNPRGGLQVAANLDQFVETEALPGTGIDSAAFWSGFDALVHELAPKNHALLAERDRL
QTELDNWHRANPGPVRDLRAYRAFLEGIGYIVPAPASVKATTDQVDTEIAEQAGPQLVVP
LSNQRYALNAANARWGSLYDALYGTDAIPETNGADRQKTFNPVRGAAVIAYARKFLDEAA
PLANGSHADATRYSVEGGKLVVALKNGTSELKTPAQFVGYQGDASAPSAVLLKHNGLHFE
IQIDANDSIGKTDAAHVKDVVVEAAVSTIIDCEDSVAAVDADDKVQLYRNWLGLMNGDLT
EEVTKNGKTFTRRLNDDRVYVAANGTAPVVLHGRSLLFIRNVGHLMTNPAVLTKDGAEIP
EGILDAVMTTLCALHDRKHKLNSRTGSIYIVKPKMHGPAEVAFASELFARVEDLLKLPRN
TIKMGIMDEERRTSVNLLACIAQASERVAFINTGFLDRTGDEMHSAMEAGPMMRKGDMKS
SAWIAAYERSNVLVGLHAGLRGRSQIGKGMWAMPDLMHAMLEQKIAHPKAGANTAWVPSP
TAATLHALHYHQIDVQAVQQQLERTDYASVRDELLDGLLTIPVVETANWSADEIRAELDN
NAQGILGYVVRWIDQGVGCSKVPDIHNIGLMEDRATLRISSQHIANWLYHGVVTREQVEE
TFKRMAQVVDQQNAGDPNYRPMAPSFDTIAFKAAQALVFEGRQQPSGYTEPLLHKFRLQV
KNG