PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_01296 FitnessBrowser__Burk376:H281DRAFT_01296 (605 amino acids)

SeqID: H281DRAFT_01296 FitnessBrowser__Burk376:H281DRAFT_01296
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [3 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 118581: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            5.22
    CytoplasmicMembrane    4.48
    Extracellular          0.22
    OuterMembrane          0.09
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_01296 FitnessBrowser__Burk376:H281DRAFT_01296
MNLRTTVLGLAILASAAMSSIVAQADSQLDGLMKSPSNWAAQAGDYANHRYSPLKQINEN
NVGKLQVAWTMSTGVLRGHEGAPLVIGDTMYIHSPFPNKVIAINLKDQTFLWQYQPKQDD
SVVSVMCCDTVNRGLAYGDGKIFLQQADTKLVALNAKTGDVVWTAQNGNSKAGETNTNAP
HVFGDKVLTGISGGEFGVRGRLIAYDIKTGKPAWTAYSTGPDKDMLMDPDKTMTYADGKM
VPVGADSSLKSWKGDQWKLGGGTTWGWYAWDPKLNLVYYGTGNPGTWNPTQRPGDNKWSM
SIMARDLNTGMAKWVYQMTPHDEWDYDGVNEMILSDLTIDGKKVPAIVHFDRNGFGYTLN
RESGQLLVAQKFDPAVNWADSVDLKSGKPIRNAAYSTQAAGSDHNVKGICPAALGSKDQQ
PAAYDPNSSLFLVPTNHVCMDYEPFDVDYVSGQPYVGATLSMYPGPNENNAMGNFIAWDA
AKGKIVWSKPEKFSVWSGALATAGGIAFYGTLEGYLKAVRIKDGKELWRFKTPSGIIGNV
FTYQYQGKQYVGVYSGIGGWAGIGMAAGLEKSTEGLGAVGGYRELAKYTALGGTLFVFAI
PGGNS