PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_01493 H281DRAFT_01493 aspartate carbamoyltransferase (430 amino acids)

SeqID: H281DRAFT_01493 H281DRAFT_01493 aspartate carbamoyltransferase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 12230948: Ornithine carbamoyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_01493 H281DRAFT_01493 aspartate carbamoyltransferase
MSVPQQAFLRDAMRRLNMTRETFAGRIGVSRRALDTWLLPDDSQESRAMPEIVERFVSEI
VVHGEPGDRYTQSVDSQSLASQMLWEGKPQLLSVDQFSRDSVEALFRVADIMQPIARRRK
ISRVLEGAVLGNLFFEASTRTRVSFGAAFCRLGGSVCDTTGFTFSSMAKGESIYDTSRVM
SGYVDALVIRHPEQGSVAEFARATNVPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIV
DGAHIALVGDLKYGRTVHSLVKLLALYRGIKFTLISPPMLEMPGYIIEQISRNGHVIEQT
HDLPTGLRGADVVYATRIQKERFTDESFEGYTPDFQINQALVDSVCGSDTLIMHPLPRDS
RPGANDLSVDLNHDSRLAIFRQTDNGIPVRMAIFAVLLGVEKLVQHSMRDAAWRPPAYLG
PDDAVFHGID