PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_01508 FitnessBrowser__Burk376:H281DRAFT_01508 (220 amino acids)

SeqID: H281DRAFT_01508 FitnessBrowser__Burk376:H281DRAFT_01508
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            2.00
    CytoplasmicMembrane    2.00
    Periplasmic            2.00
    Extracellular          2.00
    OuterMembrane          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_01508 FitnessBrowser__Burk376:H281DRAFT_01508
MSNAPAVHATNEARVREEICVTGASLYQRGYTVGSAGNISARLDDGWLITPTDACLGRLD
PTDIAKVDFDGNAVSGGKPSKTLALHRGIYARNGETRGIVHTHSTHLVALTLAGVWSEAD
VLPPITPYYVMKVGHVPLIRYRRPGDPQVAAQIAALADSVRAVLLERLGPVVWERSVAHA
SYALEELEETARLWLMTNPRPAPLDEASLEELRSAFGARW

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory