PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_01762 FitnessBrowser__Burk376:H281DRAFT_01762 (450 amino acids)

SeqID: H281DRAFT_01762 FitnessBrowser__Burk376:H281DRAFT_01762
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2493995: Diheme cytochrome c-type]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Periplasmic            0.01
    Extracellular          0.01
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_01762 FitnessBrowser__Burk376:H281DRAFT_01762
MTDMKRIGPRAAFTAFALTLAMTMVAALCAHSLAQSDSPSVDDEVSLSDPALISRGAYLA
KLGDCAGCHTVPKQGAPFAGGLPMGSPFGTIYSTNITPDPQTGIGRYSYADFERALRDGV
APGGKRLYPAMPYASFTKINDSDMHALYAYFMHGVQPVAHRPPETKLPFPFSQRWGLAFW
DFAFVQHERFIPDGKRDALWNRGAYIVQSLGHCGACHTPRGPGFEERGYDESSKLYLTGG
TNDHWFAPNLTGDPGSGLGRLSPRDIASFLKSGHGVDVHVVTFGSMVEVVEDSGQYFSDD
DLNAVARYLKSLPARQSSGAYKPNTQKLQETAVSLKAGEVERPGAGLYMSFCAKCHQADG
RGEPHKFPALAGNPAVLAPDTSSLIRLVLEGGTSPQTENGPIHREMPAFRNQFTDREIAR
VLSFVRTAWGNEARPVATRDVSTVRSKIKK