PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_02117 FitnessBrowser__Burk376:H281DRAFT_02117 (427 amino acids)

SeqID: H281DRAFT_02117 FitnessBrowser__Burk376:H281DRAFT_02117
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_02117 FitnessBrowser__Burk376:H281DRAFT_02117
MTLSATPPSANGAPVVPAVASFRSREFLLSHVEDTLRFYAPNVFDSSGGFFHFFRDDGSV
YDKTTRHLVSSCRYVFNYAMAYRQFGDPKHLEYARHGLQFLRDAHWDGQHEGYDWEIEWS
DGRKRTLDATRHCYGLAFVLLAYSHAAMAGIEEAKPMIGATFELMEHRFWDAAAGLYADE
ASPEWRVSSYRGQNANMHTTEALLAAHEATGHLVYLDRAERVASNITLRQAKLSQGLVWE
HFHADWSVDWHYNEEDSSNIFRPWGFQPGHQTEWAKLLLILERYRPLPWLLPRAIELFDA
AMTHAWDEDHGGLYYGFGPDGTVCDHDKYFWVQAETFATAALLGKRTGNERFWDWYDEIW
RYSWAHFVDHKYGAWYRILTCDNRKYSDEKSPAGKTDYHTMGACYEVLTHALADGSTAAA
VSTEHAK