PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_02122 FitnessBrowser__Burk376:H281DRAFT_02122 (1195 amino acids)

SeqID: H281DRAFT_02122 FitnessBrowser__Burk376:H281DRAFT_02122
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_02122 FitnessBrowser__Burk376:H281DRAFT_02122
MTARLPIDGTPALSDYKLSDNLTATRGRIFLTGTQALVRLALMQRSLDRARGMNTAGFIS
GYRGSPLGMVDQQLWKAKKLLSASDIRFLPAINEELGGTAVLGTQRVEADPERTVEGVFA
MWYGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGCVSSSMPHQSDFAMMAWHMPV
VNPSNIADMLEFGLYGWALSRFSGAWVGYKAISETVESGSTVDLDALRTDWSAPEDFEAP
SGGLHNRWPDLPSLTIESRMHAKLDAVRHFAKTNSIDKWIAPSPHANVGIVTCGKAHLDL
METLRRLDLTVADLDAAGVRIYKVGLSFPLEMMRIDTFVEGLSEVLVIEEKGPVIEQQIK
DYLYNRTQGARPAVIGKQAQDGSMLLSSLGELRPSRILPVFANWLAKHKPALDRRERVVD
LVAPQILSNAADSVKRTPYFCSGCPHNTSTKVPEGSIAHAGIGCHFMASWMERDTTGLIQ
MGGEGVDWASHSMFTKTRHVFQNLGDGTYFHSGILAIRQAVAAKATITYKILYNDAVAMT
GGQPVDGSISVPQIARQVEAEGVSRFVVVSDEPEKYDGHHDLFPKGTTFHHRSEMDTVQR
ELRDTDGVTVLIYDQTCAAEKRRRRKKGEFPDPDKRLFINEEVCEGCGDCGVQSNCLSVE
PVETALGRKRRIDQSSCNKDYSCVNGFCPSFVTVEGGKLKKAAGAAFDPQALAERINALR
LPATQLDAAPYDILVTGVGGTGVVTVGALISMAAHLEGKSASVLDFMGFAQKGGSVLSFV
RFAARDEWLNQVRIDTQQADVLLACDMVVGASADALQTVRHGRTRIVVNTHAIPNATFVQ
NPDATLHADALIDKMRHAAGAERMSTCDAQALATRFLGDTIGANILMLGYAWQLGLVPVS
FGALMRAIELNNVAVQMNQLAFSIGRLAAEDPAALESLWQARHAAKQTVRIDTLDELIAH
REGRLQIYGGASYVKRYRALVDAARRAESAIGANSERVTRAVATTFYRLLAVKDEYEVAR
LHTDAAFREALEAQFEGVAGKDFGINFNLAPPALTRAHSGANPTKKTFGQWMWPVLGVLA
KVRGLRGTMLDPFGRTLERKMEHELADDYETTLQRALAKLNADNLDDVAKLADLHARVRG
YGHVKLANLAGVKRGERDLAARLQIEAATGTSVKKSLEEVKGAGQLRGIPVVVAK