PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_02174 FitnessBrowser__Burk376:H281DRAFT_02174 (550 amino acids)

SeqID: H281DRAFT_02174 FitnessBrowser__Burk376:H281DRAFT_02174
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 132119: Ribose import ATP-binding protein rbsA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_02174 FitnessBrowser__Burk376:H281DRAFT_02174
VTQSGMHTPHSPQPSQSPATRPLLLEMQDIGISFGGVPALRGANLSVAAGEVHALIGQNG
AGKSTMIKILTGAYRRGSGSVRFEGREVDFRTPKQAREAGISTIYQEINLVPFRSVAENI
FLGREPRRFGLIDWRTVQHRAAALLDSFGLHIDVKKPVGRYSTAIQQMVALARAVSSDAK
MVIMDESTSSLDEREVELLFTVVRKLRDDGRAVIFVSHRLDELYALCDRVTVMRDGQTVA
QSTMAEMDKLQLVTTMLGRTLAAVVHDDPAAREANLARRGKQAIAARDLGAHPKVSDVSL
EVHAGEAVGLAGLLGSGRTETMRLMFGADPLERGSVSIDGATVTLKSPQDAIARGLAYLT
EDRKAEGIVPELSVRDNLTLVCLRTLTRNGIVDVKKQQAIVDRFIASLGIKLRSADQPIR
ELSGGNQQKVLLARWLAAEPSLLLLDEPTRGIDVGAKADVAKIVRELRDAGLAVLMSASE
LEELTAVSDRAVVIRDGRTVAELNGAEMSESAIMDAIAYGGDSSSQLAEAAQTASAAHIE
DALEGDRHGV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory