PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_02613 H281DRAFT_02613 amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (249 amino acids)

SeqID: H281DRAFT_02613 H281DRAFT_02613 amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-)
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121397: Glutamine transport ATP-binding protein glnQ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_02613 H281DRAFT_02613 amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-)
MNTMNHNGHMVQFKGVTKRFGKTVVLDRVDLNIGAGEVVVLIGPSGSGKSTLLRCINALE
QIDGGDLVVDGISVLGGAKKMREIRQEAGMVFQQFNLFPQMTALENVAFGPRQVRGMSKS
EAESLARELLTKVGLGSRVGHYACELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPEL
RQEVLRVMQALAEEGMSMVVVTHEMAFARKVGTRLIFMEHGHITVDGPPAELLDNPPNQR
LRDFLQHVG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory