PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_02713 FitnessBrowser__Burk376:H281DRAFT_02713 (313 amino acids)

SeqID: H281DRAFT_02713 FitnessBrowser__Burk376:H281DRAFT_02713
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141669: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_02713 FitnessBrowser__Burk376:H281DRAFT_02713
MKLTQRFTASALVALAASVGATAHAKDAKDISVAVIPKVAVPFFDDCNKGAKTAAGKAGV
KYQWVVPQNTQGSTQVQIIEDLISRHVDGIAISVNEPKSVESVMKRAEQSGIKVLTYDSD
SPRSGRSMYIGTNNEQAGATMAETMGKALNGQGEVAIITGQLGAVNLNERIAGIKKGLAK
YPGIKIVETQGTDDDLARGVSVVETTLRAHPQLKGIFGVSQVGGPAVAKVLNTKEFGTMK
GKLEVLAFDDLPDTLKGLKEGYIQGIMVQRPVTMGSLAVEHLVAQIQGQEAQPKDIDTGV
TVVTKDNMTSYTK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory