PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03129 FitnessBrowser__Burk376:H281DRAFT_03129 (538 amino acids)

SeqID: H281DRAFT_03129 FitnessBrowser__Burk376:H281DRAFT_03129
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 585619: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03129 FitnessBrowser__Burk376:H281DRAFT_03129
MKTPFAYATALSALVLTFTSSAFAVTVPPGVTLAASQEITRQVPAETESLDPAHIESWTG
NTIALDMFEGLTRIDAAGAVVPGVAQSWTRTGPDTWVFKLRHDARWSNGQPVTAADFIYA
WQRVLDPKTGSKYTVLVEFVKNAKAILAGKAPLASLGARAVDPYTIEVTTEVPAAFFPQL
AAMPTMAPVNRDVVARFGNEWTRPGNFVGNGPYMLADWQPNNRLVGAKSKTYWNASKVVI
TKVTYLPIENDETAMRMYQAGQFDYTYSIPSGIYAQVSKQFGPELKTGLQIATYYYSLNN
EDPIFKDKRVRQALSMVLDRDLLTQRLTADGELPMYGLISKGTQGAAVFKPDWAGWPMAK
RVDYARNLLKSAGYSDAKPLTFTLTYNTNDLHKKVALFATSEWRTKLGVNTKLENVEYKV
LLKQRHDGKVQASRDGWFVDYNDAMSYFDLIRCNSVQNDQRYCNPQVDKIVDEANQQLDD
AKRTELLTKAHDTAMNDYPMVPLFQYSAVRLVKPYVGGYTSTNYVDQRATQDMYLIKH