PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03183 FitnessBrowser__Burk376:H281DRAFT_03183 (1617 amino acids)

SeqID: H281DRAFT_03183 FitnessBrowser__Burk376:H281DRAFT_03183
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598264: NAD-dependent glutamate dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03183 FitnessBrowser__Burk376:H281DRAFT_03183
MQAKNEEAVTHLLNDVVEFARARLPEPTFHIVEPFLRHYYDFVDVDDLQSRSIPDLYGAA
LAHWQTAQRFVPGRERLRVYNPILEQHGWHSDHTVIEIVNDDMPFLVDSVSMAVNRQGLA
LHSVVHPVFRIWRGPDGDIARVTQGSEEAADTRSQLASFIHFEVDRCGDAAKLDALRDDI
AKVLRDVRAAVEDWPKIVELARVTIKAMKVGESGPDAMEARAFLEWMVADHFTFLGHRDY
ELVQQGTGYGLRAVPGSGLGIMRDELRATDGAAASPEVTVLPPAAAEIISSASPIFLTKA
NSRATVHRPGYLDYVGIKLAGADGKVVGERRFIGLYTSTAYFVSAAEIPIVRRKCANIVR
RAGFLPKGHLAKSLVTVLETYPRDELFQADENQLYDIALGVLRLQEHQRTRLFVRRDRFD
RFVSCLVFVPRDKYNTDLRQRIANLLTEAFNGASVEFTPLLSESTLARIHFVVHAKPGGM
PDVDTRELEARLVQVSRRWQDDLADALLDAFGEEQGNRLLQHYADSFPPGYRDDYAARTA
VRDIELIERVQGSERLAMNLYRPIEAGPRAFRFKVYRAGMPIALSRSLPMLEHLGVRVDE
ERPYLIEALGATPAWIHDFGLEVVDDAEFDIERVKDLFEDAFEQVWTGAIESDDFNRLVL
RAQLSAREVTILRAYAKYLRQVGSTFSDAYIERAVTGNPAIARMLVELFIARFDPSLAGT
RETRVENLLKTIDSALDQVPNLDEDRILRQFLGVIKATQRTNYYVFDADGQPKPYLSFKF
NPAQVPGLPEPKPMFEIWVYSPRVEGVHLRGGRVARGGLRWSDRREDFRTEVLGLMKAQM
VKNVVIVPVGSKGGFVVKNPPPQSERDAWMREGIACYQTFLRGLLDLTDNLAGTTVVPPR
DVVRHDPDDPYLVVAADKGTATFSDYANAISQEYGFWLDDAFASGGSVGYDHKKMAITAR
GAWESVKRHFREMGVDTQTMDFTVVGIGDMSGDVFGNGMLLSPHIRLVAAFDHRHIFLDP
NPDPAASIAERGRLFLLDRSSWADYDPSLISAGGGVFPRTAKTIALSPAVQSVLGISAAA
LSPAELMRAILQAPVDLLYNGGIGTYVKASRETHLQVGDRANDAIRVNGADLRCKVVAEG
GNLGLTQLGRIEFAQRGGRINTDAIDNSAGVDCSDHEVNIKILLGLVVADGEMTAKQRNA
LLAEMTDEVGLLVLTDNYYQTQALSIAGRYGVELLDAETRLMRYLERAGRLNRAIEFLPN
DEEVAERQAAKQGLTTPERAVLLAYSKMWLYDALLDSSVPEDPLVSDMLIEYFPRPLRQR
FSEPMQRHPLRREILATHLTNALVNRVGCEFVHRLMEETDAQPGDIVRACIMARDVFDLD
DVWRSIDALDNRVADDVQARMFVEVARLVERSALWFLRHLSSPGVNSDDVTGLLARCRDA
AQRLAPQWPALLPAADLEALSERQRVLVDAGVDSELAVRIASGEISAALLDIAEVASTCK
RKLELVAGVYFALGTLLNYNWISERAAALPAQSHWDMLARASALAELARLKRALTMSALA
SADDAATPDALVQAWRDKRATQLERYARLLADLRATGGASLSMLLVIVREMAALERA