PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03240 FitnessBrowser__Burk376:H281DRAFT_03240 (611 amino acids)

SeqID: H281DRAFT_03240 FitnessBrowser__Burk376:H281DRAFT_03240
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 130693: Pyruvate dehydrogenase [cytochrome]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03240 FitnessBrowser__Burk376:H281DRAFT_03240
MSITVGDFIIERLQAWGVRRIFGYPGDGINGVFGALNRAQTEAKKHRKTTGQPEPIEFIQ
VRHEEMAAFMASAHAKFTGELGVCIATSGPGASHLVTGLYDARMDHMPVLAITGQQARSA
LGGHYQQEVDLVSLFKDVAGAFVQQATVPAQVRHLVDRAIRTALSERKVTALVLPNDLQD
LPYEPPARKHGTLHSGVGYRAPRLVPQAEDLQQAADVLNAGKKVAILVGAGALHATDEVI
AVAEKLGAGVAKALLGKAALPDDLPWVTGSIGLLGTKPSYDLMTECDTLLMIGSGFPYAE
FLPKEGAARGVQIDLKADMLSLRYPMEVNLVGDSVETLRALLPLLEHKQDREWRKTIEGW
TADWWKTLDKRAHEPGKDAVNPQRTVWELSPRVPSNAIVTSDSGSCANWYARDLKVQRGM
MCSLSGGLASMGAAVPYAIAAKFAYPERPVIALVGDGAMQMSNMAELITVSKYWKGWADP
RWICMVLNNQDLNQVTWEQRVMEGDPKFEASQDIPSVPYHKFAELIGLKGIYVDDAEQMG
AAWDTALAADRPVVIEVKADPNIAPLPPHITLAQAKAFASTLLKGDPDEGNVIVQTAKQV
LGAVLPGHHDE