PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03298 FitnessBrowser__Burk376:H281DRAFT_03298 (879 amino acids)

SeqID: H281DRAFT_03298 FitnessBrowser__Burk376:H281DRAFT_03298
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03298 FitnessBrowser__Burk376:H281DRAFT_03298
MSKPHRFPPALAVPAVVFIIIGLALAGGGVPLVALGGSWYYVVTGIAIALTGVLLSIRRR
SALWLFALILFGSTIWAVVEARFDFWQLLPRLWVWLVLALWLLLPPVTRKLVFGPPAAHR
EGVVPLTAAVILTVLLGLVTAFNHPYDRAGTLASTAAPPTTPIAGDANRQAADWTDYGGS
PLGQRYSPLTQITPENAGQLKVAWQFETGDKPGPGDPTETTDENTPIKVGNKLFLCTPHS
IVIALDPASGKELWRYDPHIQSPVGFKHWEHMTCRGVSYHDDAMYPANAAVAAADNAAAS
APTEGAAAGAPASTDASAAASNPQASASAPAADGASATTDAANGASTAAGAEQSASAATA
ASDTSAATQQTAAAAVSAECPRRIFLPTADARLIALNADTGQPCTHFGNNGQIDLRTNIG
PFTPGGYYSTSPPAVTRDLVIISGHVTDNESTNEPSGVTRAFDVHDGHLVWNWDAGNPDE
TQPITGNQTYVRNSPNMWSVFSVDEKLGMVYLPLGNQTPDQWGGMRTPASEKVAAGVVAL
DLATGKMRWNYQFTHHDLWDMDVGGQPSLIDLQTPSGVQPALIASTKQGSLYVLNRETGK
PIVPITEEPVPQGAGTGDHTSPTQPFSALNFKPPKVRERDMWGTNPFDQLWCRVKFKSLR
YDGMFTPPSEQGSLVFPGNFGVFDWGGIAVDPVRQILIANPSYMAFTSKLVPRSQIPSDN
GEKKGSETSGIKLARGTPYGFELNAFLSPLGIPCQAPPWGYVAGVDLRTNHIVWEHKNGT
IRDSAPLPIPMPLGVPSLGGMITTAGGVAFLSGTLDYYLRAYDVRTGDRLWQARLPAGGQ
ATPMTYADSNGKQYVLVTAGGHGSLGTKQGDYVIAYTLP