PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03365 FitnessBrowser__Burk376:H281DRAFT_03365 (546 amino acids)

SeqID: H281DRAFT_03365 FitnessBrowser__Burk376:H281DRAFT_03365
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 416604: Alcohol dehydrogenase [acceptor]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03365 FitnessBrowser__Burk376:H281DRAFT_03365
MKSYTADYVIVGAGTAGCVLANRLTEDPAIKVILVEAGERDRHPFIHVPAGFVRLLDHPT
VTWRYRTEADAGTSGRAILFPRGRGLGGSSAINGLLYVRPFAEDIDSWEQSGANGWNFKN
CLPFYSRSETWTEGSSPQRGTHGPIQVSRVKNPPEICGAVVEAAQRTGLDFVDDPNSDTR
GPSIWYYQQTRDGRRRSSAARGYLRPAMARPNLTVVTGLQVSTLEMNGTHVSGINGTTGA
GIPVQIRATREVILSAGVVGTPRLLEMSGIGDKAVLDNAGVKTRIALPGVGNNLQDHYVV
RLGYRVRGAGTANERAHGLALAREMMRYVVSGTGVLTYSAALVGGFAQTRLATRPDVQFV
IAPGSFAEGRIGVLESEPGVSCGVWQMRPESRGHVHITSSEITAAPTIAPSYLSSELDRN
TMVEGLKIGRRIFAQPEVARYIVDETVPGRQADTDEALLQYVRDNGSTVYHAVGTCRMGE
DEMSVVDSEMRVRGTTGLRVVDGSVMPSITSTNTNATVLMLAERAADMIRSPMAAHASST
YSKETV