PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03563 FitnessBrowser__Burk376:H281DRAFT_03563 (1006 amino acids)

SeqID: H281DRAFT_03563 FitnessBrowser__Burk376:H281DRAFT_03563
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599966: probable ferredoxin[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03563 FitnessBrowser__Burk376:H281DRAFT_03563
MTNPTSALLVKPIHLVPSTARLMTPLAQHLRKSLRGDVLFDAASRGRYATDASIYQIMPV
GVVVPRDQDDLRIALDIARSEKVPLLARGAGTSQCGQTVGEALVIDTSKWLNNIVDFNLE
ARTVTVEPGVVLDHLNAWLKPHGLWFPVDVSTAAQCTIGGMAGNNSCGSRSIEYGNMVHN
VEAIDAILADGTEARFASLRDAPQGARLQQIFEGVRQIAQRERDEIVARVPKVLRRVAGY
NIDLFDCQNPRAYTDDGVANLAHLLVGSEGTLAFSRQLTLKLAPLPAHKTLGVVNFPTFW
QSMDLTQHIVKLKPVAVELVDRTMIDLAMSNPAFRPVVEKALVGEPQAVLLVEFAGESRD
AQLESLRQLSELMADLGLPGSVVEMPDANAQKALWEVRKAGLNIMMSMKGDGKPVSFIED
CAVPLEHLAEYTSQLTEVFHRHGTEGTWYAHASVGTLHVRPILDMRRDGAVKMRAIAEQA
AALVREYKGAYSGEHGDGLCRGEWVAWQYGPKLNQAFSEIKALFDPDNRFNPDKMVRPPK
MDDPRYFRFAPGYQERPIEPALDWSAWNVERDPLTGRETAPGSGNDLAGGLAKAVEMCNN
NGHCRKFDAGTMCPSYRVTKDEQHVTRGRANTLRLAISGQLGEAGLASDEVKDTLDLCVS
CKGCKRDCPTGVDMAKFKIEARAARVKRHGLTLRDKLVAFMPRYAAAASRMPGLIAVADN
VPLVSSLFKRAVGFASERSLPRFRKSFLSSASPTVNAHGATLKEVLLFVDTFNNSMEPEN
ARAAQKVLEAAGYTVHFNMREGERPVCCGRTFLAAGLVDEAKHEARRMLDLFNPFVERGV
PIVGLEPSCLLSLRDEFLHYGFGDEAQQLAKQAFLFEEFLVREEKAGRLELALKPLDTPQ
ALVHGHCHQKAFDAFTPVQTVLKWIPELKVSTVESSCCGMAGSFGYEAEHYATSQAMAEL
SLLPAVRKIDGNTVMVADGTSCRHQIHDGAGVEAIHVARVLAMALQ