PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03697 FitnessBrowser__Burk376:H281DRAFT_03697 (546 amino acids)

SeqID: H281DRAFT_03697 FitnessBrowser__Burk376:H281DRAFT_03697
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2506182: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03697 FitnessBrowser__Burk376:H281DRAFT_03697
MEPSAHVDTFARDNLPPQDEWPVFLLDNPDVAYPARFNCATELLARTIEAGHGERAAIWS
LVDNEPRATSYKELLAMVNRSAHVLVDEMGLQPGNRILLRGPNTLQMAVAALAALKVGLV
AVPTMPLLRAKELKQIIAKAQVSAALCDARLTEELARCNDPQDEFYCAELKQTLLFHDDA
VDSLDTLAINKPADFAACDTAADDVCLIAFTSGTTGAPKGCMHFHRDVLAMCDLFPRHVL
KPSASDIFCGTPPLAFTFGLGGLLCFPLRVGASTVLIEKLTPETLLQTVERFHATIMFTA
PTFYRQMAPLVARHDVSSLQKTVSAGEALPDSTRRLWRDATGIDMIDGIGGTELIHIFVS
AQGDEIRPHAIGRAVPGYIVQAVDDAMQPVAPGTIGKLAVRGPTGCRYLADERQMKFVRD
GWNLPGDSVYLDADGYVFYQARADDMIVSAGYNISGPEVESVLLQHEAVAECGVIGVPDE
TRGQIVKAFVVLNPGYTCDDNLVAQLQDFVKNTVAPYKYPRVVAFVDSLPRTETGKLKRF
ELRTMA