PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03806 FitnessBrowser__Burk376:H281DRAFT_03806 (742 amino acids)

SeqID: H281DRAFT_03806 FitnessBrowser__Burk376:H281DRAFT_03806
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1708408: Isocitrate dehydrogenase [NADP]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03806 FitnessBrowser__Burk376:H281DRAFT_03806
MSTPPKIIYTLTDEAPALATYSLLPIVKAFTRSSDVIVETRDISLAGRIIAAFPDYLTAE
QKGSDDLAELGGLTTRPEANIIKLPNISASVPQLKAAITELRDQGYKLPAYPDVATTETE
KDVKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWSADSKSHVAHMSGG
DFYGSEKSALIAAAGAVKIELTAADGTKTVLKEKTPVQAGEIIDASVLSKNALRSFIEAE
IADAKRKGVLFSVHLKATMMKVSDPIIFGHVVSVFYKDVLTKHADALAQAGFNPNNGIGD
LYARLKDLPAETAAQIEADIKAQYEQRPQLAMVNSDKGITSLHVPSDVIVDASMPAMIRE
SGKMWGADGALHDAKAVIPDRCYAGVYQAVIEDCKKNGAFDPVTMGTVPNVGLMAQAAEE
YGSHDKTFQIPANGVVRVTDASGAVLIEQAVEAGDIWRMCQTKDAPVQDWVKLAVNRARA
TNTPAVFWLDAARAHDAQIIKKVEQYLKDHDTNGLDIRIMTPVEATKFSVERIRAGKDTI
SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQLVEEGFL
RWDSLGEFLALAASLEHLSSAYHNPKAQVLAKTLDQATGKFLDNDKSPARKVGGLDNRGS
HFYLAMYWAEALAAQTEDAALQAQFAGVAKAMADNEAKILEELRAAQGKPVDIGGYYRPN
VELTSKAMRPSATLNEIVDSIA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory