PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03822 FitnessBrowser__Burk376:H281DRAFT_03822 (320 amino acids)

SeqID: H281DRAFT_03822 FitnessBrowser__Burk376:H281DRAFT_03822
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15597142: binding protein component precursor of ABC ribose transporter[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03822 FitnessBrowser__Burk376:H281DRAFT_03822
MTQEMRRRVLIAGALAAAGLTRAAGAATVEGGMPKIALVLKSINDPFTVAMANAAKNYQQ
HYASQFALTVRGTATEADTAGQIRIVDDLIKAKMNAIVIAPSGSKPLTAVVARAIKAGII
VVSIDNPLDDASQDAAKISVPFVGPDNRKGATLVANYLAGRLQAGDQVGIIEGIAADRNA
QERTAGYRDVMSTAGMQVVATQAADWEYGKGRDVASKMLGQHPQIRGLLCANDNMAMGAA
DAVRDAGRTGGVYITGYNAIEAIKPLIADGHVLATVNQFADRQAVFGMDVALKAVTEQRK
QRELSRTIETPLQLVTAATR