PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03942 FitnessBrowser__Burk376:H281DRAFT_03942 (983 amino acids)

SeqID: H281DRAFT_03942 FitnessBrowser__Burk376:H281DRAFT_03942
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131905: formate dehydrogenase-H, selenopolypeptide subunit [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03942 FitnessBrowser__Burk376:H281DRAFT_03942
MSDMLNTPAGGCGSGNCACKSQAQAQSRTPRSYFDDTDYGTPERHADIDVTLEIDGQAVT
VPAGTSVMRAAIEAGVNVPKLCATDSLEPFGSCRLCLVEIEGKRGYPASCTTPVEAGMKV
RTQSDRLQSLRRNVMELYISDHPLDCLTCPANGDCELQDMAGVTGLREVRYGIDGANHLQ
DKKDESNPYFTYDPAKCIVCNRCVRACEETQGTFALTIAGRGFESRVAASENQPFMESEC
VSCGACVSACPTATLQEKTVVMLGQAEHSVVTTCAYCGVGCSFKAEMKGNQVVRMVPFKN
GQANEGHACVKGRFAWGYATHKDRITKPMIRAKITDPWREVSWEEAINYAASEFRRIQAK
HGRDSIGGITSSRCTNEETYLVQKLVRAAFGNNNVDTCARVCHSPTGYGLKTTLGESAGT
QTFASVDKADVIMVIGANPTDGHPVFGSRLKRRVREGAKLIVVDPRRIDIVDTPHVKASH
HLQLRPGTNVAIVNALAHVIVTEGLLNEAFISERCEGRAFDQWRDFVALPENAPEATEAV
TGVPAKDVREAARIYATGGNAAIYYGLGVTEHAQGSTMVMGIANLAMATGNIGREGVGVN
PLRGQNNVQGSCDMGSFPHELPGYRHISDTIVRSQFEDAWNVTLQTEPGLRIPNMFEAAL
DGSFMGLYCQGEDIVQSDPNTHHVAAALSSMECIVVQDIFLNETAKYAHVLLPGSTFLEK
DGTFTNAERRISRVRKVMPPVPGYADWEVTLLLSRALGYEMDYAHPSEIMDEIARLTPTF
HGVSYKKIDELGSIQWPCNEEAPDGTPTMHIDTFVRGKGKFVITKFIASPEKVTRKFPLL
LTTGRILSQYNVGAQTRRTENSRWHDEDRLELHPHDAEERGIKTGDWVGIESRAGQTVLR
AKVTERMQPGVVYTTFHFPESGANVITTDSSDWATNCPEYKVTAVQVMPVEQPSQWQKEY
SRFNAEQLELLKQREMANATAGK