PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_03948 FitnessBrowser__Burk376:H281DRAFT_03948 (433 amino acids)

SeqID: H281DRAFT_03948 FitnessBrowser__Burk376:H281DRAFT_03948
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 116479: Citrate-proton symporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_03948 FitnessBrowser__Burk376:H281DRAFT_03948
MSTASHAISSSQESKAKTVFRVVSGNFLEMYDFMVYGYYASAIAKTYFPSGSEFASLMLS
LSVFGAGFLMRPLGAIVLGAYIDHHGRRKGLILTLGLMALGTLTVASIPGYATIGLLAPV
LVLLGRLLQGFSAGVELGGVSVYLSEIATKGNKGFYCAWQSGSQQVAVVFAALLGVMLNK
MLPADQMSAWGWRVPFLIGCLIVPFLFMIRRSLKETEEFSARKHRPGMGEIMKTMAANWG
TVLGGMGMVIMTTVSFYMITAYTPTFGKEVLKLSSIDTLVVTVCIGLSNLIWLPLAGALS
DRIGRRPVLLAFTALTIVTAYPALQWLVAEPSFARLLAVELWLSFLYGSYNGAMVVALTE
VMPVEVRTAGFSLAYSLATTIGGFTPAISTLLIHSTGNKAAPGLFLGVAAICGLIATLVL
YRTPESRDQYKAA