PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04063 H281DRAFT_04063 amino acid/amide ABC transporter substrate-binding protein, HAAT family (400 amino acids)

SeqID: H281DRAFT_04063 H281DRAFT_04063 amino acid/amide ABC transporter substrate-binding protein, HAAT family
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 12230875: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    CytoplasmicMembrane    0.12
    Extracellular          0.11
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04063 H281DRAFT_04063 amino acid/amide ABC transporter substrate-binding protein, HAAT family
MRVKFAYAVSIAAAVAMLTACGKKQDGEAGAGASAAVAASAAPASEAIVVKIGHAAPLTG
GIAHLGKDNENGARLAVEEINAQGLTIDGHKIDLQLDAQDDAADPKAGTAVAQKLVDDHV
VAVVGHLNSGVSIPASKIYSDASIVQISPSSTNPAYTQQGFKTTYRVVATDAQQGPALAN
YATKALGAKRIAVVDDATAYGKGLADEFAKTVEASGAKIVAREATNDRATDFRAILTKIK
SVHPDAIMFGGMDATGGPFAKQAAALGIRAKILGGDGVCTDKVGELAGTAVQNLVCSEAG
LALSKMDRGADFEKKYVDRFHTPVQIYAPFTYDAVYVIVDAMKRANSIEAPKVLAAMPST
DYNGVIGRIAFDDKGDLKEGAITLYDFKDGKKAVLDVVKM