PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04094 FitnessBrowser__Burk376:H281DRAFT_04094 (744 amino acids)

SeqID: H281DRAFT_04094 FitnessBrowser__Burk376:H281DRAFT_04094
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            CytoplasmicMembrane           [matched PS00221: MIP Pattern - Cytoplasmic Membrane]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6174923: Oligopeptide transport ATP-binding protein oppD]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04094 FitnessBrowser__Burk376:H281DRAFT_04094
MNGPPPSSFPAFDVSKSDRTDALTVVGLTVTYRMRGRDREVLQDVSFRVRRGEAYGLVGE
SGCGKSTVAMAALRYLPRNGKVKAGKIVIAGADVNKLDADALRTMRANTISMVYQDPARA
LNPSLTIARQVSEAFEAAGVAPDEALQRSLEMLQRVRIASPERVMDSYPHQLSGGMQQRV
VIAMALASNPALLILDEPTTGLDATVEAEVLDLVAQLRAELGTAVLFISHNLAVIGRMCE
RVGVLYAGKLVEEGATQDVFTRPRHPYTVGLLRCLPTVGRSKDTERLDTIAGGLPSPGSV
TQGCIYAERCRLADDRCRREAPPPYRVSAAHGDQMSRCHYHERAIELPRALAQALPEHDL
ANADKNPRELVLRAENLSKTFHVSGTALRAVDKVSLDLAAGETLGLVGESGSGKTTLAKL
MLGLLAPDAGSVLELDGAPLAARVTRRNDEQVKSLQIVFQNPDSALNRAHSVKRLIGRAL
SRLAALRGAAIDERLATLTAAVRLPERYLGSRTRQLSGGLKQRVAIARAFAGEPRVVVCD
EPTSALDVSVQAAILNLLADLQRERGVSYVFISHDLHVVRYLSDRIAVLYLGRLLEIGPA
AAVFDGPQHPYTEALLSSVPTLDGHASVARVRLSGDLPSAASPPSGCVFHTRCPRKLGAI
CEQQDPPFAEAADAAYVSQATGSAREATSRIGRKHLIRCHIPADELRALQTASRDQANDQ
ARGEASDVARDKPASPANGAGRDS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory