PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04114 H281DRAFT_04114 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family (252 amino acids)

SeqID: H281DRAFT_04114 H281DRAFT_04114 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 130017: Acetoacetyl-CoA reductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04114 H281DRAFT_04114 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family
MEIRDNVFLITGGASGLGAATARLLAENGGKVVLADLNQDAGEALAKELGGIFVKCDVSR
EDDATQAVAAATKLGMLRGLVNCAGVAPAVKTVGKDGPHPLDSFTRTISINLIGTFNMIR
LAATAMSKNEPNANGERGVIINTASVAAYDGQIGQAAYAASKGGVVGMTLPIARDLSRNA
IRVMTIAPGIFETPMLLGMPQEVQDALGAMVPFPPRLGKPAEYAMLAKQIFDNPMLNGEV
IRLDGAIRMQPK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory