PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04158 FitnessBrowser__Burk376:H281DRAFT_04158 (311 amino acids)

SeqID: H281DRAFT_04158 FitnessBrowser__Burk376:H281DRAFT_04158
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84027910: Inner membrane ABC transporter permease protein ycjO]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04158 FitnessBrowser__Burk376:H281DRAFT_04158
MRPLRLPLMHAHPQTEKEREVRKANSARWLVSPSVAVLLLWMTIPLAMTIWFSFSRYNLL
NPDLKGFAGFDNYQFLASDPSFGPSIGHTLQLIVSVLVITVVGGVLMAILFDRKFYGQGV
ARLLAIAPFFVMPTVSALIWKNMILHPVYGLVASGMRAIGLQPIDWFAEYPLTAVIMIVA
WQWLPFAFLILFTAIQSLDQEQKEAARIDGAGPFSMFFYITLPHLKRAIAVVVMMETIFL
LSIFAEIYTTTGGGPGTATTNLSYLIYSLGLQQFDVGLASAGGILAVVLANIVSFFLVRM
LAKNLKGEYEK