PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04211 FitnessBrowser__Burk376:H281DRAFT_04211 (552 amino acids)

SeqID: H281DRAFT_04211 FitnessBrowser__Burk376:H281DRAFT_04211
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 17865747: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04211 FitnessBrowser__Burk376:H281DRAFT_04211
MATVGGHISPVPMTRDEKRVIFASSLGTVFEWYDFYLAGSLAAFISKSFFSGVNPTAGFI
FTLLSFAAGFAVRPFGAVVFGRLGDMVGRKYTFLVTIVIMGLSTFLVGFLPGYAAIGIAS
PVIFIAMRMLQGLALGGEYGGAATYVAEHAPPGRRGFYTAWIQTTATLGLFLSLLVILGV
RTAMGEDAFGAWGWRIPFIASILLLGVSVWIRLQLHESPVFERIKAEGKTSKAPLSEAFG
QWKNLKVVILALIGLTAGQAVVWYTGQFYTLFFLTQTLKVDGATANIMIAIALLIGTPFF
LFFGSLSDRIGRKPIIMAGLLIAALTYFPLFKALTHYVNPALETATAKAPIVVIANPDEC
SFQFNPVGTSKFTSSCDIAKSALSKSGLNYENVAAPVGTLAQIKVGDTVVSTYDGKAADA
KDQGKVFDKSLSTTLKSAGYPPKADSSQINWPMSVVILTILVIYVTMVYGPIAAMLVEMF
PTRIRYTSMSLPYHIGNGWFGGFLPATAFAIVAAKGNIYSGLWYPIVIALITFVIGMLFV
RETKDSDIYAKD