PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04276 H281DRAFT_04276 gluconate permease GntT (461 amino acids)

SeqID: H281DRAFT_04276 H281DRAFT_04276 gluconate permease GntT
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 54041238: High-affinity gluconate transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04276 H281DRAFT_04276 gluconate permease GntT
MEAVHGSTLLVFGVIAIALLILLITRYKVYPFLVLIIVSLLLGLASGMPMATIVKSFETG
NGNTLGHIAVVVGLGTMLGKMMAESGGAERIATTLINWFGEKNIHWAMMVVAIIVGLPVF
FEVGFVLLIPIAFNVAKRTNKSLLLVGLPMVAGLSVVHGLIPPHPAAMLAVQQYHADIGK
TIAYGLIIGVPTAIVAGPLFALLISRYVKLPQENALAAQFLGHDDAAKNGATNTAPKREL
PSFGITLFTVLLPVILMLVGSWADLVFTPKTLPNDLLHFVGNSDVALLIAVLVSFWTFGA
SRGFNRDQIQKFCGECLAPIAGITLIVGAGGGFGRVLMDSGISKEIVAAATAAHLSPLLF
GWLVAALIRLATGSATVAMTTACGIVAPIAAASGVQVKPELLVLATGSGSLIFSHVNDGG
FWLIKEYFGMTVGQTFKTWSLLETIISLMGLGLTFALAAVL