PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04573 FitnessBrowser__Burk376:H281DRAFT_04573 (777 amino acids)

SeqID: H281DRAFT_04573 FitnessBrowser__Burk376:H281DRAFT_04573
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 62297831: NADH-quinone oxidoreductase subunit 3 (NADH dehydrogenase I chain 3)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    6.29
    Cytoplasmic            3.70
    Periplasmic            0.01
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04573 FitnessBrowser__Burk376:H281DRAFT_04573
MVELEIDGKKVEVPEGSMVIQAAHKVDTYIPHFCYHKKLSIAANCRMCLVDVEKMPKAVP
ACATPVSAGMIVRTKSDKAVKGQQAVMEFLLINHPLDCPICDQGGECQLQDLAVGYGKSS
SRYSEEKRVVFHKNVGPLISMEEMSRCIHCTRCVRFGQEVAGVMELGMLGRGEHSEITSF
VGKTVDSELSGNMIDLCPVGALTSKPFRYSARTWELSRRRSVSPHDSVGANLVVQVKNNR
VMRVLPFENEAINECWISDKDRFSYEGLNSPERLTQPMLKQGGKWVETDWQTALDYVVKG
LKGIKGDHGANALAALGSAHSTVEELFLLKQLAQAVGTPNVDFRLRQSDFSAPVSGTPWL
GTAIADLSNIDSALVIGSDLRRDHPLFAARLRQAAKGGAKLTLVQATGDDALIPQGQRLS
AAPSAWLDTLAGIASAVSQANGTALPEAFSSAQATDSDKEVAKSLATGERRLVLLGNGAV
RHPDFAVIHAAAQWIADATGATLGFMTEAANTVGAHLVNALPGEGGLNAREVFEQPRKGY
LLLNVEPEFDTANPAQALAALKQAEMVVVMSPFQTGAEYADVLLPIAPFTETAGTFVNAE
GTVQSFNGVVRPLGDTRPAWKVLRVLGSLLGVPGFEYDTAEEVRQAALGDGELQSRLSNR
TGVAVARGKTAKAAEGKFERIADVPIYHADALVRRAESLHLTAAARAANNVGLPAALFDK
LGLKEGDAVRVRQGEQSVQLPAVRDANLAETVVRVSAATPAGAALGSLFGELVVEKA