PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04595 H281DRAFT_04595 3-hydroxyacyl-CoA dehydrogenase (521 amino acids)

SeqID: H281DRAFT_04595 H281DRAFT_04595 3-hydroxyacyl-CoA dehydrogenase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598786: probable hydroxyacyl-CoA dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04595 H281DRAFT_04595 3-hydroxyacyl-CoA dehydrogenase
MTSRNFSIETIGIVGTGAMGRGIAQIAALAGLTVRLYDANPAAIGAARDYLAETFAKLTA
KGKLEQARSLAALANVTAAHAITDLADCDLVIEAIVEKLEVKQALFRELETVVSGRCVLA
SNTSSLSITAIAAGCTDPSRVAGYHFFNPVPLMKVVEVIDGLRSDRQAGDALMDLARRMG
HTPVRAKDMPGFIVNHAGRGMNTEGLRVAGEGVASFVDIDRIMREQAGFRLGPFELLDLT
ALDVSHPVMESIYHQFYEEPRFTPSPITGTRLAGGLLGRKTGEGFYRYEDGKQQAPAETP
APAALPTSVWVSKRYREAYQAVVELVGKAGVKLDDGASPAADSLIVVTPFGHDATTAAVD
EALDASRVVAIDALFPLVGTQRRTLMTTPATTRAARDAGHALFSADGVPVTVIRDSTGFV
AQRVVATIVNIGCDIAQKQIATPEDIDLAVMLGLGYPRGPLALGDALGAKTILTILRNMF
DVLGDPRYRPSPWLARRAQLGMSLTQSDAADTQTENPETQQ