PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04684 FitnessBrowser__Burk376:H281DRAFT_04684 (471 amino acids)

SeqID: H281DRAFT_04684 FitnessBrowser__Burk376:H281DRAFT_04684
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600548: glycolate oxidase subunit GlcD[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04684 FitnessBrowser__Burk376:H281DRAFT_04684
VNHSVSPATLRRPFPAELLSALTNAFGERVSIAQAVREHHGRDESPFDPQLPDAVVFARN
TEDVQTAVKLCGQYNVPIIPYGNGSSLEGHLLAVQGGVSIDLSEMNRVLSINAEDLTVTV
EPGISRKQLNEALRDTGLFFPIDPGADASIGGMSATRASGTNAVRYGTMRENVLGLTVVL
ADGRVIKTGTRARKSSAGYDLTRLFVGSEGTLGVITEVTVRLYPQPEAVSAAVCAFPSMG
DAVRAVIETIQIGVPIARVEFVDALAIRSINRHSNLTLREAPTLFFEFHGTEAGVKEQAE
LVQELAAQNGGEGFEWATRPEDRSRLWNARHNAYFAMLQLKPGCRAVTTDVCVPISRLAE
CVVETEQDLKASPLPCPIVGHVGDGNFHVAILIDPNKPEELAEAERLNHRIVQRALRMDG
TCTGEHGVGLHKMGFLLEEHGDVAVDTMRSIKHALDPHNLMNPGKIFSWAA