PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04686 FitnessBrowser__Burk376:H281DRAFT_04686 (401 amino acids)

SeqID: H281DRAFT_04686 FitnessBrowser__Burk376:H281DRAFT_04686
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 124028636: Flavohemoprotein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04686 FitnessBrowser__Burk376:H281DRAFT_04686
MTALTAEQIARVKATVPVLAEHGTTITKHFYKRMFARHPELKNLFNQTHQQSGNQPETLA
RAVYAYAANIDNLGALGPTVSRIANKHASLNIRPEHYPIVGRHLLGAIVDVLGDAVDQPT
LDAWQVAYGQLANIFVGTEAKLYEGAAWSGFRPFKVARKQVESDEITSFYLTPADGSAAC
DFEPGQYVSVKRFVDKLGVDQPRQYSLSDAPHGKWLRISVKREDGREDIAPGHVSNLLHA
DVEEGTVVHVSAPMGDFTLDRKKTTPVVLMSGGVGVTPMTSMLSTILADGSERSVTFVHA
CRNGRVHAFRQWLNETVASHSNVKRVVFYEAVGEGDRRGVDYDFDGRLDVAGIAGQVIVP
DADYYICGPVPFMRAQCDALAALGVDPARIHTEVFGSGVVE