PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04843 FitnessBrowser__Burk376:H281DRAFT_04843 (310 amino acids)

SeqID: H281DRAFT_04843 FitnessBrowser__Burk376:H281DRAFT_04843
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600647: oxidoreductase Rmd[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04843 FitnessBrowser__Burk376:H281DRAFT_04843
MRITVFGGGGFIGSTIVDRLLRDGHEICVFERARVGPYRRFDNGEDVRWMTGDLMSVHDI
TEAIDSTDIVVHLVSTTLPKSSNDDPIYDVQSNLVATLHLLNAMVAKSVKKIVFISSGGT
VYGDPIYLPVDEKHPTNPKVSYGITKLAIEKYLLLYQYQYGIKANILRVANPYGERQRVE
TAQGAIAVFLDKALRRRPIEIWGDGTITRDYLYIGDVAEAFARAVQYDGTESVFNVSSGY
GTSLNEIVGKIEAILGHPIERSYRPGRPFDVPASVLDNTLAKRELEWHPKVDLDAGIKMT
AAWLRAQIHE