PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04873 FitnessBrowser__Burk376:H281DRAFT_04873 (507 amino acids)

SeqID: H281DRAFT_04873 FitnessBrowser__Burk376:H281DRAFT_04873
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600291: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04873 FitnessBrowser__Burk376:H281DRAFT_04873
MMTLKPGHLTLPQLRQIAREHVPLRLDPASHAAIDACAKAVADIAAKGEPAYGINTGFGR
LASTHIPHDQLELLQRNLVLSHAVGVGEPMSRPVVRLLIALKLSSLGRGHSGIRREVMEA
LITLYNADVLPVIPVKGSVGASGDLAPLAHMSAVLLGVGEVFAKGERLPATEGLSLVGLK
PLTLQAKEGLALLNGTQASTALALYNMFAIEDLYRTALVAGALSVDAAAGSVKPFDARIH
ELRGHQGQIDAASAYRSLLQGSGINVSHADCDKVQDPYSLRCQPQVMGACLDQMRHAADV
LLLEANAVSDNPLIFPDTGEVLSGGNFHAEPVAFAADNLALAAAEIGALAERRIALLIDA
TLSGLPPFLVRDGGVNSGFMIAHVTAAALASENKTLAHPASVDSLPTSANQEDHVSMATF
AARKLGDIAENTANILSIELLAAAQGVDLRAPHKTSPSLQKVMDVVRKDVAHYELDHYFA
PDIAAVTRLVQNGTIAKLSPFSFVSEQ