PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_04953 H281DRAFT_04953 acetyl-coenzyme A synthetase (660 amino acids)

SeqID: H281DRAFT_04953 H281DRAFT_04953 acetyl-coenzyme A synthetase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597193: probable AMP-binding enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_04953 H281DRAFT_04953 acetyl-coenzyme A synthetase
MSAIESVLQERRVFPPSAEAAAGATISGMDAYHALTAEAERDYEGFWGRLARETLSWNKP
FTKVLDESKAPFYTWFEDGQLNASYNSIDRHVEAGNGERVAIIFEADDGTVTNVTYQDLL
QRVSRFANALKTRGVKKGDRVVIYMPMSIEGIVAMQACARIGATHSVVFGGFSSKSLNER
LVDVGAVALVTSDEQMRGGKALPLKNIADEALAMGGCEAVKSVIVYQRTGGKIAWNESRD
LWMHEISQAESDQCAPEWVGAEHPLFILYTSGSTGKPKGVQHSTGGYLLWAAQTMKWTFD
WKSSDVFWCTADIGWITGHSYITYGPLTLGGTQVVFEGVPTYPNAGRFWDMIAKHKVTLF
YTAPTAIRSLIKAAEADAKVHPKSYDLSTLRIIGTVGEPINPEAWVWYYENVGGGRCPIV
DTWWQTETGGHMITPLPGATPLVPGSCTLPLPGIMAAVVDETGQDVPNGQGGILVVKRPW
PSMLRNVWGDPDRYKKSYFPEELGGKLYLAGDGAVRDKDTGYFTIMGRIDDVLNVSGHRL
GTMEIESALVSNPIVAEAAVVGRPDATTGEAVCAFVVLKRARPEGEEAVKLANELRNWVG
KEIGPIAKPKDIRFGENLPKTRSGKIMRRLLRSLAKGEEITQDVSTLENPAILDQLGESL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory